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Picard2.27.2 by Sourceforge |
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Software Description:
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...
type: Open Source
Download Picardcategories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate Add to Download Basket Report virus or spyware |
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| Software Info | |
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Best Vista Download periodically updates pricing and software information of Picard full version from the publisher,
but some information may be out-of-date. You should confirm all information. Software piracy is theft, using crack, warez passwords, patches, serial numbers, registration codes, key generator, keymaker or keygen for Picard license key is illegal and prevent future development of Picard. Download links are directly from our mirrors or publisher's website, Picard torrent files or shared files from rapidshare, yousendit or megaupload are not allowed! |
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| Released: | May 25, 2022 |
| Filesize: | 16.60 MB |
| Platform: | Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11 |
| Install | Instal And Uninstall |
| Add Your Review or Windows Vista Compatibility Report |
Picard- Releases History |
| Software: | Picard 2.27.2 |
| Date Released: | May 25, 2022 |
| Status: | New Release |
| Software: | Picard 2.20.7 |
| Date Released: | Sep 16, 2019 |
| Status: | New Release |
| Release Notes: | Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests. Updating gradle to 5.6 (#1380) Updating NIO dependency and fixing a dependency issue (#1391) Update to htsjdk 2.20.3 (#1381) Extend travis build matrix to separate Barclay tests from legacy tests. (#952) PO-18867 Catch NaN Percent_Duplication edge case (#1389) |
| Software: | Picard 1.119 |
| Date Released: | Sep 2, 2014 |
| Status: | New Release |
| Release Notes: | Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates. Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set. Modified Casava18ReadNameEncoder to correctly display filter status. SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments. CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively. Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle. FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams. Fixed a bug in BCF2Writer where it was double-closing the output stream. Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF. |
Most popular open command line in CAD downloads for Vista |
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Fityk 1.3.1 download by Marcin Wojdyr
... functions. Fityk offers intuitive graphical interface (and also command line interface), variouse optimization methods (standard Marquardt least-square algorithm, ...
type: Open Source
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categories: analytical functions, photoelectron spectroscopy, Raman spectroscopy, crystallography, analytical, chromatography |
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Qucs 0.0.19 download by Michael Margraf
... Qucsator, the simulation backend, is a command line circuit simulator. It takes a network list in ...
type: Open Source
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categories: circuit simulator, Harmonic Balance analyzer, noise analyzer, simulator, simulate, analyze |
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MuniWin 2.1.13 download by David Motl
... of reduction process can be run from the command line or via simple and intuitive graphical user interface. ... few new functions in addition. Syntax of the command-line parameters is similar in both projects, the exceptions ...
type: Open Source
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categories: image reduction, astrophotometry tool, CCD camera, reduce, reduction, astrophotometry |
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Kst 2.0.8 download by Barth Netterfield
... Built-in filtering and curve fitting capabilities. · Convenient command-line interface. · Powerful graphical user interface. · Support for several popular data formats. · Multiple tabs. · Extended annotation objects similar ...
type: Open Source
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categories: view large-datasets, dataset viewer, plot dataset, view, plotter, viewer |
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Open3DALIGN 2.28 download by Paolo Tosco
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command ...
type: Freeware
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categories: molecular alignment, molecular dynamics, dataset compound, molecule, alignment, compund |
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Open3DALIGN x64 2.28 download by Paolo Tosco
Open3DALIGN x64 is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command ...
type: Freeware
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categories: x64 molecular alignment, x64 molecular dynamics, x64 dataset compound, x64 molecule, x64 alignment, x64 compund |
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Gnuplot for Windows 5.2.7 download by Philipp K. Janert
Gnuplot is a portable command-line driven graphing utility for linux, OS/2, MS Windows, ... either 2D and 3D. It can draw using lines, points, boxes, contours, vector fields, surfaces, and various
type: Open Source
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categories: portable, Gnuplot, Gnu plot, utility, graph plotter, plot graph, plotter, graph |
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OpenRAVE 0.9.0 download by Rosen Diankov
OpenRAVE provides an environment for testing, developing, and deploying ... kinematic and geometric information related to motion planning. OpenRAVE’s stand-alone nature allows is to be easily integrated into existing robotics systems. It provides many command line tools to work with robots and planners, ...
type: Open Source
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categories: simulation environment, test environment, development environment, environment, simulate, simulator |
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jHepWork 3.9 download by Dr. Sergei Chekanov
... scientists, engineers and students. The program incorporates many open-source math software packages into a coherent interface using ... manipulation. The libraries include numerical and analytical calculations, linear algebra operations, equation solving algorithms. Many libraries are ...
type: Freeware
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categories: data-analysis framework, data manipulation, data plotting, analyze, analysis, analyzer |
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TaxRTip 3.0f Beta download by Michael Friga
TaxRTip is designed as an exploration of the C# language by a novice programmer. It may be very simple and have a very small use factor, but it is designed for ...
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