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Picard2.27.2 by Sourceforge |
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Software Description:
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...
type: Open Source
Download Picardcategories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate Add to Download Basket Report virus or spyware |
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| Software Info | |
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Best Vista Download periodically updates pricing and software information of Picard full version from the publisher,
but some information may be out-of-date. You should confirm all information. Software piracy is theft, using crack, warez passwords, patches, serial numbers, registration codes, key generator, keymaker or keygen for Picard license key is illegal and prevent future development of Picard. Download links are directly from our mirrors or publisher's website, Picard torrent files or shared files from rapidshare, yousendit or megaupload are not allowed! |
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| Released: | May 25, 2022 |
| Filesize: | 16.60 MB |
| Platform: | Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11 |
| Install | Instal And Uninstall |
| Add Your Review or Windows Vista Compatibility Report |
Picard- Releases History |
| Software: | Picard 2.27.2 |
| Date Released: | May 25, 2022 |
| Status: | New Release |
| Software: | Picard 2.20.7 |
| Date Released: | Sep 16, 2019 |
| Status: | New Release |
| Release Notes: | Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests. Updating gradle to 5.6 (#1380) Updating NIO dependency and fixing a dependency issue (#1391) Update to htsjdk 2.20.3 (#1381) Extend travis build matrix to separate Barclay tests from legacy tests. (#952) PO-18867 Catch NaN Percent_Duplication edge case (#1389) |
| Software: | Picard 1.119 |
| Date Released: | Sep 2, 2014 |
| Status: | New Release |
| Release Notes: | Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates. Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set. Modified Casava18ReadNameEncoder to correctly display filter status. SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments. CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively. Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle. FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams. Fixed a bug in BCF2Writer where it was double-closing the output stream. Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF. |
Most popular java development in CAD downloads for Vista |
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Picard 2.27.2 download by Sourceforge
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read ... binary (BAM) format are supported. A set of Java command line tools for manipulating high-throughput sequencing (HTS) ...
type: Open Source
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categories: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate |
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ASDN - Agile Supply Demand Networks 1.218 download by Petri Helo
... by University of Vaasa, Finland and ABB Operations Development Group. ...
type: Open Source
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categories: design logistics networks, analyze logistics networks, develop logistics networks, create, design, analyze |
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jAGN 1.02 download by Fabricio M. Lopes
jAGN is a small, Java based application specially designed to offer you a ... networks of molecules connected by chemical reactions. The development of massive data collection techniques, as cDNA microarrays
type: Freeware
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categories: artificial gene networks generation, generate artificial gene networks, complex network model, create, generate, generator |
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Integrated Genome Browser 7.0.4 B15225 download by Integrated Genome Browser Team
... the sequence itself. IGB is implemented using the Java programming language and should run on any computer. ... it did not start out that way. Initial development of the software was largely funded by Affymetrix, ...
type: Freeware
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categories: view microarray design, microarray design viewer, explore genome-scale data, visualization, view, viewer |
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JigCell for Windows 7.1.0 download by Jason Zwolak
JigCell is an effort to develop and maintain an open source modeling environment for computational biology. The goal of this project is to support building and testing models for studying complex ...
type: Open Source
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categories: development environment, computational biology development, biochemical regulatory system, development, environment, biology |
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Cytoscape 3.9.0 download by Cytoscape Consortium
... anyone using the Cytoscape open API based on Java™ technology and plugin community development is encouraged. Most of the plugins are freely ...
type: Open Source
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categories: molecular interaction network, molecule visualization, bioinformatics viewer, visualization, molecule, Biology |
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Cytoscape x64 3.10.0 download by Cytoscape Consortium
... anyone using the Cytoscape open API based on Java™ technology and plugin community development is encouraged. Most of the plugins are freely ...
type: Open Source
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categories: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology |
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SCaVis 2.3 download by Dr. Sergei Chekanov
... fully multiplatform and runs on any platform where Java is installed. As a Java application, SCaVis takes the full advantage of multicore ... be used with several scripting languages for the Java platform, such as Jython (the Python programming language) ...
type: Freeware
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categories: data-analysis framework, data manipulation, data plotting, analyze, analysis, analyzer |
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Toxtree 3.1.0 download by Ideaconsult LTD
Toxtree is a full-featured and flexible user-friendly open source application, which is able to estimate toxic hazard by applying a decision tree approach. Toxtree could be applied to datasets from ...
type: Open Source
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categories: toxic hazard, estimate compound, chemical hazard estimator, toxic, hazard, estimator |
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Toxtree Portable 3.1.0 download by Ideaconsult LTD
Toxtree is a full-featured and flexible user-friendly open source application, which is able to estimate toxic hazard by applying a decision tree approach. Toxtree could be applied to datasets from ...
type: Open Source
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categories: toxic hazard, estimate compound, chemical hazard estimator, toxic, hazard, estimator |
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